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Delicious and fluffy, whole wheat chocolate chip banana muffins are the perfect tasty whole-grain breakfast. Made with 100% whole wheat, they’re super fluffy and packed with amazing banana flavor and a kiss of chocolate chips.

a side profile of banana chocolate chip muffins in a muffin tin.
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Pair the natural sweetness of bananas with filling whole wheat flour, add a few chocolate chips (ok, maybe more than a few), and ta-da, breakfast is served!

You’re going to love these whole wheat banana muffins for a fast make-ahead breakfast. Park the extras in the freezer and sit back and watch while your family gets their own quick breakfast in the morning.

ingredients on a white wooden board.
Calling a mulligan on this one – I forgot the sea salt and Greek yogurt for this picture

a note from sarah

Ingredient notes

For the bananas, we’re looking for overly ripe bananas with at least a few black spots on the peel. They should be soft without being completely mushy.

If you have more ripe bananas to use up, check out our banana French toast or brown sugar banana bread.

Pro Tips/Recipe Notes:

  • Allow the batter to rest a bit after mixing. By allowing the batter to rest for 5-10 minutes after creating it, you let the gluten do its sciencey thing and produce air bubbles. Those bubbles are the difference between a fluffy and a dense muffin.
  • The natural sweetness of the bananas means very little added sugar is needed to make these delicious. You could leave it out entirely if you’d like, but after so many variations of this recipe, I found a scant 1/4 cup of organic sugar was a perfect balance.
  • Store at room temperature in an air-tight container for up to two days or freeze for 2-3 months.
5 from 11 ratings

Fluffy Whole Wheat Chocolate Chip Banana Muffins

Servings: 18
Prep: 15 minutes
Cook: 15 minutes
Total: 30 minutes
a muffin tray with a fluffy healthy banana chocolate chip muffin in focus
Delicious and fluffy, whole wheat chocolate chip banana muffins are the perfect tasty whole-grain breakfast. Made with 100% whole wheat, they're super fluffy and packed with amazing banana flavor and a kiss of chocolate chips.

Ingredients 

Instructions 

  • Preheat oven to 350˚F.  
  • In a stand mixer fitted with a paddle attachment, mix the bananas until mostly smooth.
    2 cups very ripe bananas
  • Add the eggs, Greek yogurt, butter, milk, and vanilla, and mix to combine.
    2 eggs, 1/2 cup plain Greek yogurt, 1 tsp pure vanilla extract, 3 tbsp butter, 1/4 cup milk
  • In a separate bowl, thoroughly mix the dry ingredients, excluding chocolate chips. 
    2 cups whole wheat pastry flour, 2 tbsp vital wheat gluten, 1/4 cup sugar, 1 tbsp baking powder, 2 tsp baking soda, 1/2 tsp sea salt
  • With the mixer on low/stir, add the dry ingredients, and mix until barely combined. There may be a bit of flour mixture left unincorporated; that's ok.
  • Remove the bowl from the mixer, and fold in the chocolate chips with a spatula, gently making sure all the dry ingredients are fully incorporated.
    1/4 cup chocolate chips
  • Set the bowl aside and let it rest for 5-10 minutes.
  • Place cupcake liners in a muffin pan, or grease the muffin pan. Fill each section of the muffin pan three-quarters full with the batter.
  • Bake for 15 minutes, or until a toothpick inserted into the center comes out clean. Allow to cool in the pan for 10 minutes, and then remove and place on a cooling rack.

Notes

  1. To store the muffins: allow muffins to fully cool and transfer them to an air-tight container. Store at room temperature for 1-2 days, and then in the fridge or freezer after that.
  2. Allow the batter to rest a bit after mixing. By allowing the batter to rest for 5-10 minutes after creating it, you let the glutens do their sciencey thing and produce air bubbles. Those bubbles are the difference between a fluffy and a dense muffin.
  3. The natural sweetness of the bananas means very little sugar is needed to make these delicious. You can leave it out entirely if you prefer.
 

Nutrition

Serving: 1muffinCalories: 126kcalCarbohydrates: 21gProtein: 4gFat: 4gSaturated Fat: 2gCholesterol: 24mgSodium: 152mgPotassium: 229mgFiber: 2gSugar: 8gVitamin A: 113IUVitamin C: 2mgCalcium: 52mgIron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: Breakfast
Cuisine: American
Tried this recipe?Mention @sustainablecooks or tag #sustainablecooks!
2 muffins in a muffin tin.

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About Sarah Cook

I'm here to help you make easy, seasonal, and no-fuss recipes for yourself and your family.

Whether it's a quick one-pot dinner or if I am teaching you how to can and preserve local produce, you can consider me your elder millennial grandma

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5 from 11 votes (1 rating without comment)

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20 Comments

  1. My son became obsessed with taking mini muffins as his afternoon snack for school this year. I turned to Sarah to find a substitution that would save us money, have known ingredients, and reduce our plastic packaging waste. She delivered with this recipe! I made mini muffins with a 10 minute bake time and my son has already eaten 4 of them for snack!5 stars

  2. I forgot how good these are but was reminded when I made them again yesterday. I made them as mini muffins and did a mix of cinnamon and chocolate chips. Delicious. I had to stop the kiddo after he had 6. 

    And I only had enough bananas to make a half batch, but can testify that wasn’t a problem. Now I have to make sure to add some extra bananas to my shopping list so I can make them again soon. 

    Thanks for the awesome recipe Sarah!5 stars

  3. These are amazing! One of the healthiest breakfasts my picky 2 & 3 year old kids will gobble up. Both times we made them I had to guard them from becoming lunch and dinner too. We’ve made them twice now and they will be on weekly rotation! 5 stars

  4. Another winner thanks Sarah 🙂
    We made it dairy free with oat milk and coconut yoghurt, added in some cinnamon and a couple sad looking pears finely diced.5 stars

  5. I just made these again and they are so freaking amazing even with all my crazy substitutions! I think next batch I will skip the chocolate chips and try adding Emma’s chocolate protein powder. And maybe a little zucchini. Maybe.
    Here are the GF/DF substitutions:
    Bob’s Red Mill 1-for-1 flour
    No vital wheat gluten
    Dairy free butter
    Daiya plain yogurt (I was out for this batch, so I used some coconut oil????‍♀️)
    Cashew milk
    Maple syrup instead of sugar (a glug, so maybe 1 tbsp?)
    I refuse to buy vanilla (thanks to you) and I didn’t bring any, so I skipped that but added 3 tsp (I think) of cinnamon.

    Now I need to buy more bananas to have at the ready for the next batch!

    1. Thank you, thank you, thank you for adding your substitutions! I’m sure others will find it helpful.

      And I love anyone who uses cinnamon like a condiment. Samesies. 🙂

  6. I used this recipe as a lose guide to magic up some gluten and dairy free chocolate chip banana muffins and even with all the substitutions they came out amazing! Thanks for pointing me in the right direction ????5 stars

  7. Hey Sarah – not surprising that these were awesome and my kiddo cannot stop eating them. I may have to hide them. I also didn’t fill the muffin tins very full so I got 1 dozen regular and 2 dozen minis – but they’re already half gone. 

    We had some toasted walnuts, from earlier in the week, so I added them and we also used mini chocolate chips (because I always feel like you’re getting more chocolate with them). 

    Sooo good!5 stars

    1. Awww, so glad to hear that! My kids would never eat walnuts in muffins, so I’m super impressed with your kiddos!

  8. I’ve made these muffins a few times now, and my whole family loves them! I use spelt flour rather than whole wheat since that’s what I typically have on hand, and toss in a handful of frozen blueberries instead of chocolate chips (I’m a mean mom). Love that it’s an easy enough recipe that my kids can help out too!5 stars

  9. These are VERY good! In love with the texture, so airy and fluffy, not dry at all…Amazing for whole wheat! I skipped the chocolate and added chopped dates, raisins and walnuts llus a dollop of peanut butter in the moddle of each muffon. Also skipped the sugar, they still tasted wonderful. Will make these very often. Thank you so much for sharing your recipe ❤️5 stars

    1. Marina, I LOVE your additions/substitutions! They sound delicious and I’m so glad you enjoyed them. Thanks for taking the time to leave a review!

  10. Wait, what happened to the lady with no tact? We have bananas coming out of our butts here in Hawaii, so thanks for the recipe.
    Aloha

    1. She eventually left the company, but I’m not sure why. Everyone knew by then that she was pretty selfish.

      I hope you like your bags! 🙂