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Make the creamiest homemade Gluten-Free Cheese Sauce in under 15 minutes! Skip the store-bought cheese sauce and whip up a batch from scratch today. 

a spoon with gluten-free cheese sauce over a saucepan
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What’s better than perfectly roasted veggies or homemade air fryer pretzel bites? Well, those things but with a delicious, creamy, and EASY homemade gluten-free cheese sauce!

Seriously, give me 10-15 minutes and you’ll be the hero of dinner time.

This sauce is small-batch, but you can easily double or triple it. Down in the printable recipe card, you’ll find an option to increase the servings.

butter, cornstarch, whole milk, extra sharp cheddar, and other ingredients on a grey board.

Gluten-Free Roux Options

A roux is essentially combining fat with flour or another starch and cooking it slowly to form a smooth paste. The roux is the base of most homemade cream sauces and it’s traditionally made with all-purpose flour.

To make a cheese sauce that is gluten-free, you can use: cornstarch, arrowroot powder, tapioca starch, or sweet rice flour.

A cup-for-cup gluten-free flour (like King Arthur) will also work. My preference is cornstarch as I think it creates the smoothest roux.

Why Does Cheese Sauce Become Grainy?

Many people give up making homemade cheese sauce when it turns grainy the first time they make it. Don’t worry, I’m here to help!

The best way to keep it from getting grainy in the first place is to use low heat, cook things slowly, and add additional ingredients slowly while whisking constantly. Also, you must use warmed milk in your homemade cheese sauce to keep it smooth.

Whenever possible, grate your own cheese for the smoothest homemade cheese sauce. Pre-shredded cheese from the store often contains cellulose to keep the pieces from sticking together. A side effect of cellulose is cheese that doesn’t melt evenly.

If possible, allow your grated cheese to sit at room temp for 10-15 minutes before it is added to the hot roux/milk mixture. This will prevent the cold cheese from breaking the sauce when incorporated.

How to Fix Grainy or Curdled Cheese Sauce

So, you cooked your sauce too quickly at too high of a heat, and it broke and became grainy. It happens!

To fix it, you’ll first want to remove the pot from heat. Continuing to overcook the sauce will not fix anything.

Next, add in 2 tsp of lemon juice OR white wine OR warmed heavy cream. Use ONE of these – do not use a combination. Then, whisk smoothly but vigorously off heat until the sauce has become smooth.

Homemade Cheese Sauce Variations

This recipe calls for a mix of extra sharp cheddar and a bit of shredded Parmesan. You can use all extra sharp cheddar if that’s all you have on hand.

Other great options are mixing up multiple kinds of cheese with extra sharp as the base. A few great options are gruyere, gouda, emmental, and colby Jack.

If you’re looking for something closer to a pourable nacho cheese sauce, leave out the Parmesan and use all extra sharp cheddar, PLUS chop up some canned pickled jalapenos to give it some kick. Stir them in after the sauce has finished cooking.

Pro Tips/Recipe Notes

  • Do not skip the step of warming the milk before adding it to the gluten-free roux. This will prevent the sauce from breaking/curdling.
  • When you first add the milk to the roux, it’s going to get lumpy and look like a hot mess (see the third photo on the right in the photo grid above). Just keep adding the milk bit by bit, whisking constantly.
  • Add in a pinch of black or white pepper if desired.
  • If you aren’t using a strong cheese (like extra sharp cheddar), the sauce may taste a bit underwhelming. Try adding sea salt 1/8 tsp at a time, tasting with each addition.
  • Using 1/2-1 tsp of dry mustard powder and/or chicken bouillon powder can also intensify the taste of the sauce.
  • Storage: You can keep this covered in the fridge for 2-3 days. To reheat: cook over low heat, stirring slowly with a whisk (this whisk is similar to the one you see in my photos) to make sure the sauce doesn’t curdle or break.
a grey plate with roasted broccoli drizzled in gluten-free cheese sauce
5 from 2 ratings

Gluten-Free Cheese Sauce

Servings: 16
Prep: 5 minutes
Cook: 10 minutes
Total: 15 minutes
a spoon with gluten-free cheese sauce over a saucepan
Make the creamiest homemade gluten-free cheese sauce in under 15 minutes! Skip the store-bought cheese sauce and whip up a batch from scratch today. 

Equipment

Ingredients 

  • 2 tbsp unsalted butter
  • 2 tbsp cornstarch
  • 1 1/2 cup whole milk {warmed}
  • 1/2 tsp garlic powder
  • 1 1/4 cup extra sharp cheddar {shredded}
  • 1/4 cup Parmesan {shredded}
  • 1/4 tsp sea salt

Instructions 

  • In a medium saucepan melt the butter over medium-low heat.
    2 tbsp unsalted butter
  • Sprinkle in cornstarch and then whisk gently for ~3 minutes or until the cornstarch and butter have taken on a caramel color.
    2 tbsp cornstarch
  • Slowly pour in the warmed milk (about 1/2 cup at a time), garlic powder, and salt, whisking constantly. Cook for 2 minutes while whisking.
    1 1/2 cup whole milk, 1/2 tsp garlic powder, 1/4 tsp sea salt
  • Add the extra-sharp cheddar and Parmesan and stir gently on low heat until melted. This can take 3-5 minutes.
    Pro tip: the Parmesan will be the last to melt because it is a harder cheese.
    1 1/4 cup extra sharp cheddar, 1/4 cup Parmesan
  • Salt and pepper to taste.

Notes

  • Do not skip the step of warming the milk before adding it to the gluten-free roux. This will prevent the sauce from curdling/breaking.
  • Whenever possible, grate your own cheese for the smoothest homemade cheese sauce.
  • You can keep this sauce covered in the fridge for 2-3 days. To reheat: cook over low heat, stirring slowly with a whisk to make sure the sauce doesn’t curdle or break. Or microwave in 15-second increments, stirring each time.
  • Cornstarch alternatives: arrowroot powder, tapioca starch, or sweet rice flour. A cup for cup gluten-free flour (like King Arthur) will also work.
  • Using 1/2-1 tsp of dry mustard powder and/or chicken bouillon powder can also intensify the taste of the sauce.

Nutrition

Serving: 2tbspCalories: 73kcalCarbohydrates: 2gProtein: 3gFat: 6gSaturated Fat: 3gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gTrans Fat: 1gCholesterol: 16mgSodium: 128mgPotassium: 44mgFiber: 1gSugar: 1gVitamin A: 181IUVitamin C: 1mgCalcium: 110mgIron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Additional Info

Course: How To, Sauce
Cuisine: American
Tried this recipe?Mention @sustainablecooks or tag #sustainablecooks!

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About Sarah Cook

I'm here to help you make easy, seasonal, and no-fuss recipes for yourself and your family.

Whether it's a quick one-pot dinner or if I am teaching you how to can and preserve local produce, you can consider me your elder millennial grandma

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2 Comments

  1. Just put this sauce on top of French fries and then more shredded cheese on top. Omg adding this to my list! Better than any cheese sauce made with flour. My fiancé recently got diagnosed celiac. This recipe will be a life saver for us. And it tastes GREAT 
    Another plus is that it’s simple and has limited ingredients. Never in my life would I have ever imagined using cornstarch like a roux. Genius. 

    Thank you so much for sharing. – D5 stars

    1. So glad you enjoyed it, Danielle! I love the idea of it on French fries, and I’m so glad I could help your fiance in any way on his celiac journey.